Rodriguez W, Muller M. Shiftless, A Critical Piece of the Innate Immune Response to Viral Infection. Accepted at Viruses. 2022.

Bermudez Y, Miles J, Muller M. Nonstructural protein 1 (nsp1) widespread RNA decay phenotype varies among coronaviruses. BioRXiv 2022.

Rodriguez W., Mehrmann T., Muller M. Shiftless Restricts Viral Gene Expression and Influences RNA Granule Formation during KSHV lytic replication. BioRxiv 2022.

Macveigh-Fierro D., Cicerchia A., Cadorette A., Sharma V., Muller M. The m6A reader YTHDC2 is essential for escape from KSHV SOX-induced RNA decay. 

Hoffman D, Rodriguez W, Macveigh-Fierro D, Miles J, Muller M. The KSHV ORF20 Protein Interacts With The Viral Processivity Factor ORF59 And Promotes Viral Reactivation. Microbiol Spectr 2021 9:e00145-21.

Macveigh-Fierro D, Rodriguez W, Miles J, Muller M. Stealing the Show: KSHV Hijacks Host RNA Regulatory Pathways to Promote Infection. Viruses 2020, 12, 1024.

Rodriguez W, Macveigh-Fierro D, Miles J, Muller M. Fated for decay: RNA elements targeted by viral endonucleases. Seminars in Cell and Developmental Biology, 2020.

Rodriguez W, Srivastav A, Muller M. C19ORF66 broadly escapes viral-induced endonuclease cleavage and restricts Kaposi Sarcoma Associated Herpesvirus (KSHV). J Virol 93:e00373, 2019.

Muller M, Glaunsinger B. Nuclease escape elements protect messenger RNA against cleavage by multiple viral endonucleases. PLoS Pathogens 13(8): e1006593, 2017

Muller M, Hutin S, Marigold O, Li KH, Burlingame A, Glaunsinger B. A Ribonucleoprotein Complex Protects the Interleukin-6 mRNA from Degradation by Distinct Herpesviral Endonucleases. PLoS Pathogens 11(5): e1004899, 2015. plospathogens/article?id=10.1371/journal.ppat.1004899

Muller M, Demeret C. CCHCR1 Interacts Specifically with the E2 Protein of Human Papillomavirus Type 16 on a Surface Overlapping BRD4 Binding. PLoS ONE 9(3): e92581, 2014. (Highlighted in Faculty of 1000: eval793493753). 1

Muller M, Cassonnet P, Favre M, Jacob Y & Demeret C. A Comparative Approach to Characterize the Landscape of Host-Pathogen Protein-Protein Interactions. J. Vis. Exp. (77), e50404, 2013.

Muller M, & Demeret C. The HPV E2-host protein-protein interactions: a complex cellular network hijacking. Open J. Virol, 6, 173-189, 2012https://www.ncbi.

Neveu G., Cassonnet P., Vidalain P.O., Rolloy C., Mendoza J., Jones L., Tangy F., Muller M., Demeret C., Tafforeau L., Lotteau V., Rabourdin-Combe C., Travé G., Dricot A., Hill D., Vidal M., Favre M., Jacob Y. Comparative analysis of virus-host interactomes with HT-GPCA, a high-throughput mammalian assay to probe protein interactions. Methods 58, 349–359, 2012.

Muller M, Jacob Y, Jones L, Weiss A, Brino L, Chantier T , Lotteau V, Favre M., Demeret C. Large Scale Genotype Comparison of Human Papillomavirus E2-Host Interaction Networks Provides New Insights for E2 Molecular Functions. PLoS Pathogens 8(6): e1002761, 2012. (Comment in: Pathogens and Global Health: Pathog Glob Health. 2012 Jul;106(3):141). 2761

Cassonnet P, Rolloy C, Neveu G, Vidalain PO, Chantier T, Pellet J, Jones L, Muller M, Demeret C, Gaud G, Vuillier F, Lotteau V, Tangy F, Favre M, Jacob Y. Benchmarking of a luciferase-based assay for detecting protein-protein interactions. Nature Methods 8 (990–992), 2011.